Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs4457221 chr7:29701774 C/T 5.23E-13 118 37.63 46.27 6 KM Plot
THYM rs4458523 chr4:6289986 G/T 3.09E-6 119 50.1 40.78 25.83 KM Plot
THYM rs4467645 chr4:6294305 C/T 1.43E-6 118 25.83 38.58 50.1 KM Plot
THYM rs4481292 chr4:6298375 C/T 1.13E-6 114 25.83 38.58 50.07 KM Plot
THYM rs4481540 chr7:158785846 A/G 2.29E-6 119 40.3 40.67 27.77 KM Plot
THYM rs4500280 chr1:227494976 C/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs4501291 chr4:6298582 C/T 1.13E-6 114 25.83 38.58 50.07 KM Plot
THYM rs4503424 chr10:13985820 T/G 0.000279 118 48 35 12.87 KM Plot
THYM rs4516729 chr4:126094379 A/G 4.34E-5 119 38.13 31.35 48 KM Plot
THYM rs4519274 chr14:78311991 T/C 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs4521361 chr4:12511950 T/G 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs4534022 chr6:3267128 T/C 0 118 4.13 44.3 38.33 KM Plot
THYM rs4545305 chr1:227467234 T/C 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs4563584 chr5:179049329 G/A 0.000288 118 37.63 50.47 28.43 KM Plot
THYM rs4602755 chr6:3265090 T/C 0 119 4.13 42.25 38.58 KM Plot